Sequence Similarity Clusters for the Entities in PDB 1AV6

Entity #1 | Chains: B
RNA (5'-R(*GP*AP*AP*AP*AP*A)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 5539
95 % 19 22 2420
90 % 19 22 2478
70 % 19 22 2468
50 % 19 22 2458
40 % 19 22 2424
30 % 19 22 2321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.