Sequence Similarity Clusters for the Entities in PDB 1AV6

Entity #1 | Chains: B
RNA (5'-R(*GP*AP*AP*AP*AP*A)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 4814
95 % 19 22 2696 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 19 22 2763
70 % 19 22 2737
50 % 19 22 2712
40 % 19 22 2640
30 % 19 22 2460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures