Sequence Similarity Clusters for the Entities in PDB 1AR1

Entity #1 | Chains: A
CYTOCHROME C OXIDASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25606
95 % 3 4 15785 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 4 15495
70 % 12 15 2314
50 % 45 60 478
40 % 45 60 520
30 % 45 60 518
Entity #2 | Chains: B
CYTOCHROME C OXIDASE protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26970
95 % 3 3 22619 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 3 21960
70 % 3 3 20146
50 % 3 3 17472
40 % 3 3 15585
30 % 3 3 13352
Entity #3 | Chains: C
ANTIBODY FV FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16068
95 % 4 5 15019 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 5 14753
70 % 272 386 9
50 % 394 583 7
40 % 634 936 5
30 % 709 1065 7
Entity #4 | Chains: D
ANTIBODY FV FRAGMENT protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16121
95 % 4 5 15078 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 5 9 4990
70 % 129 191 73
50 % 204 308 22
40 % 635 936 5
30 % 710 1065 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures