Sequence Similarity Clusters for the Entities in PDB 1AR1

Entity #1 | Chains: A
CYTOCHROME C OXIDASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 22865
95 % 3 4 20471 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 4 19874
70 % 13 16 2362
50 % 53 68 455
40 % 53 68 485
30 % 53 68 490
Entity #2 | Chains: B
CYTOCHROME C OXIDASE protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29032
95 % 3 3 25361 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 3 24488
70 % 3 3 22207
50 % 3 3 19084
40 % 3 3 16845
30 % 3 3 14342
Entity #3 | Chains: C
ANTIBODY FV FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16875
95 % 4 5 15649 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 5 15312
70 % 294 420 9
50 % 416 629 6
40 % 3640 5933 1
30 % 4495 7388 1
Entity #4 | Chains: D
ANTIBODY FV FRAGMENT protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16876
95 % 4 5 15650 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 5 9 5323
70 % 141 216 70
50 % 206 327 21
40 % 243 371 27
30 % 4496 7388 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures