Sequence Similarity Clusters for the Entities in PDB 1AR1

Entity #1 | Chains: A
CYTOCHROME C OXIDASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26201
95 % 3 4 16131 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 4 15826
70 % 13 16 2162
50 % 47 62 472
40 % 47 62 516
30 % 47 62 508
Entity #2 | Chains: B
CYTOCHROME C OXIDASE protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27575
95 % 3 3 23095 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 3 22407
70 % 3 3 20540
50 % 3 3 17783
40 % 3 3 15852
30 % 3 3 13574
Entity #3 | Chains: C
ANTIBODY FV FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16473
95 % 4 5 15357 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 5 15074
70 % 282 402 9
50 % 403 603 7
40 % 643 963 5
30 % 718 1093 7
Entity #4 | Chains: D
ANTIBODY FV FRAGMENT protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16526
95 % 4 5 15414 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 5 9 5123
70 % 129 195 75
50 % 204 315 23
40 % 644 963 5
30 % 719 1093 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures