Sequence Similarity Clusters for the Entities in PDB 1AR1

Entity #1 | Chains: A
CYTOCHROME C OXIDASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25192
95 % 3 4 15556 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 4 15263
70 % 12 15 2268
50 % 45 60 473
40 % 45 60 508
30 % 45 60 508
Entity #2 | Chains: B
CYTOCHROME C OXIDASE protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26554
95 % 3 3 22288 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 3 21652
70 % 3 3 19856
50 % 3 3 17231
40 % 3 3 15380
30 % 3 3 13175
Entity #3 | Chains: C
ANTIBODY FV FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15803
95 % 4 5 14806 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 5 14536
70 % 267 379 9
50 % 389 576 7
40 % 629 929 5
30 % 703 1056 7
Entity #4 | Chains: D
ANTIBODY FV FRAGMENT protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15855
95 % 4 5 14866 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 5 9 4909
70 % 129 191 72
50 % 204 308 21
40 % 630 929 5
30 % 704 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.