Sequence Similarity Clusters for the Entities in PDB 1AQD

Entity #1 | Chains: A,D,G,J
HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 71 231
95 % 37 78 292 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 42 94 231
70 % 42 94 266
50 % 58 146 173
40 % 58 146 188
30 % 119 304 93
Entity #2 | Chains: B,E,H,K
HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 38 552
95 % 18 41 683 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 35 73 341
70 % 56 137 163
50 % 58 146 172
40 % 58 146 187
30 % 120 304 93
Entity #3 | Chains: C,F,I,L
HLA-A2 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.