Sequence Similarity Clusters for the Entities in PDB 1AQD

Entity #1 | Chains: A,D,G,J
HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 82 230
95 % 46 89 282 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 51 105 237
70 % 51 105 267
50 % 71 161 184
40 % 71 161 195
30 % 145 334 98
Entity #2 | Chains: B,E,H,K
HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 38 596
95 % 18 41 753 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 44 84 328
70 % 69 152 161
50 % 71 161 183
40 % 71 161 194
30 % 146 334 98
Entity #3 | Chains: C,F,I,L
HLA-A2 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures