Sequence Similarity Clusters for the Entities in PDB 1AQD

Entity #1 | Chains: A,D,G,J
HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 82 235
95 % 46 89 278 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 51 105 230
70 % 51 105 263
50 % 71 161 176
40 % 71 161 191
30 % 145 334 82
Entity #2 | Chains: B,E,H,K
HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 38 657
95 % 18 41 739 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 44 84 314
70 % 71 159 146
50 % 71 161 177
40 % 71 161 192
30 % 146 334 82
Entity #3 | Chains: C,F,I,L
HLA-A2 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures