Sequence Similarity Clusters for the Entities in PDB 1AQ4

Entity #1 | Chains: R,S
RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3') rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 36 96
95 % 27 37 121 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.7
PDBFlex
90 % 27 37 124
70 % 27 39 139
50 % 28 41 135
40 % 28 41 152
30 % 28 41 167

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1MSC 1 A BACTERIOPHAGE MS2 COAT PROTEIN 329852
2 4ZOR 1 A, B, C, D, E Coat protein 329852
3 2BU1 1 A, B, C MS2 COAT PROTEIN 329852
4 2C4Q 1 A, B, C COAT PROTEIN 329852
5 2IZN 1 A, B, C MS2 COAT PROTEIN 329852
6 2C4Z 1 A, B, C COAT PROTEIN 329852
7 1ZDH 2 A, B, C PROTEIN (BACTERIOPHAGE MS2 COAT PROTEIN) 329852
8 2C4Y 1 A, B, C COAT PROTEIN 329852
9 2C51 1 A, B, C COAT PROTEIN 329852
10 5MSF 2 A, B, C MS2 PROTEIN CAPSID 329852
11 1ZDI 2 A, B, C PROTEIN (RNA BACTERIOPHAGE MS2 COAT PROTEIN) 329852
12 2MS2 1 A, B, C BACTERIOPHAGE MS2 COAT PROTEIN 329852
13 1MST 1 A, B, C BACTERIOPHAGE MS2 CAPSID 329852
14 2BS0 1 A, B, C COAT PROTEIN 329852
15 1U1Y 2 A, B, C Coat protein 329852
16 1ZDJ 2 A, B, C PROTEIN (MS2 PROTEIN CAPSID) 329852
17 6MSF 3 A, B, C PROTEIN (MS2 PROTEIN CAPSID) 329852
18 1MVB 1 A, B, C BACTERIOPHAGE MS2 CAPSID 329852
19 2C50 1 A, B, C COAT PROTEIN 329852
20 7MSF 2 A, B, C MS2 PROTEIN CAPSID 329852
21 1AQ3 2 A, B, C PROTEIN (BACTERIOPHAGE MS2 COAT PROTEIN) 329852
22 1UNA 1 A, B GA UNASSEMBLED COAT PROTEIN DIMER THIS BACTERIOPHAGE COAT PROTEIN WAS CRYSTALLIZED AS AN UNASSEMBLED DIMER. IT DID NOT FORM VIRAL CAPSIDS. 329853
23 1BMS 1 A, B, C BACTERIOPHAGE MS2 CAPSID 329852
24 2IZ9 1 A, B, C MS2 COAT PROTEIN 329852
25 2B2D 2 A, B, C Coat protein 329852
26 1ZDK 2 A, B, C PROTEIN (MS2 PROTEIN CAPSID) 329852
27 1MVA 1 A, B, C BACTERIOPHAGE MS2 CAPSID 329852
28 1AQ4 2 A, B, C PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN) 329852
29 2BNY 1 A, B, C MS2 COAT PROTEIN 329852
30 2B2G 2 A, B, C Coat protein 329852
31 2IZM 1 A, B, C MS2 COAT PROTEIN 329852
32 2BS1 1 A, B, C MS2 COAT PROTEIN 329852
33 2IZ8 1 A, B, C MS2 COAT PROTEIN 329852
34 1ZSE 2 A, B, C Coat protein 329852
35 2B2E 2 A, B, C Coat protein 329852
36 1FRS 1 A, B, C BACTERIOPHAGE FR CAPSID 329852
37 2BQ5 1 A, B, C COAT PROTEIN 329852
38 1FR5 1 A, B, C BACTERIOPHAGE FR CAPSID 329852
39 1GAV 1 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i BACTERIOPHAGE GA PROTEIN CAPSID 329853
40 5TC1 1 A, B, C, D, E, F, G, H Capsid protein The capsid of MS2 contains 178 copies of the coat protein arranged as 89 dimers in a T=3 icosahedral lattice. Structure of the capsid has been solved by crystallography with icosahedral symmetry applied (PDB ID 2MS2, also included as chains A, B, C in this model). Chains D, E, F, G, H are coat proteins that have slightly different structures in the asymmetric cryoEM reconstruction compared to the crystallographic structure. Structures of the other 170 copies of the coat protein are the same with 2MS2, and thus are not included due to the limited number of chain IDs. 329852
41 4BP7 1 A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax, B0, B1, B2, B3, B4, B5, B6, B7, B8, B9, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Bf, Bg, Bh, Bi, Bj, Bk, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx, C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx COAT PROTEIN 329852