Sequence Similarity Clusters for the Entities in PDB 1APZ

Entity #1 | Chains: A,C
ASPARTYLGLUCOSAMINIDASE protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20946
95 % 2 2 18880
90 % 2 2 18375
70 % 2 2 16925
50 % 2 2 14757
40 % 2 2 13157
30 % 2 2 10658
Entity #2 | Chains: B,D
ASPARTYLGLUCOSAMINIDASE protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19752
95 % 2 2 16302 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 15950
70 % 2 2 14886
50 % 2 2 13110
40 % 2 2 11768
30 % 9 10 2885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures