Sequence Similarity Clusters for the Entities in PDB 1APY

Entity #1 | Chains: A,C
ASPARTYLGLUCOSAMINIDASE protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21646
95 % 1 2 18681 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18193
70 % 1 2 16846
50 % 1 2 14667
40 % 1 2 13058
30 % 1 2 11179
Entity #2 | Chains: B,D
ASPARTYLGLUCOSAMINIDASE protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22180
95 % 1 2 19069 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 18555
70 % 1 2 17167
50 % 1 2 14934
40 % 1 2 13298
30 % 4 10 2769

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.