Sequence Similarity Clusters for the Entities in PDB 1APY

Entity #1 | Chains: A,C
ASPARTYLGLUCOSAMINIDASE protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21175
95 % 1 2 19086 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 2 18566
70 % 1 2 17109
50 % 1 2 14908
40 % 1 2 13269
30 % 1 2 10760
Entity #2 | Chains: B,D
ASPARTYLGLUCOSAMINIDASE protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19985
95 % 1 2 16496 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 16133
70 % 1 2 15053
50 % 1 2 13250
40 % 1 2 11878
30 % 4 10 2892

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures