Sequence Similarity Clusters for the Entities in PDB 1APY

Entity #1 | Chains: A,C
ASPARTYLGLUCOSAMINIDASE protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20152
95 % 1 2 19958 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 2 19379
70 % 1 2 17766
50 % 1 2 15457
40 % 1 2 13756
30 % 1 2 11163
Entity #2 | Chains: B,D
ASPARTYLGLUCOSAMINIDASE protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21758
95 % 1 2 17263 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 16855
70 % 1 2 15641
50 % 1 2 13740
40 % 1 2 12316
30 % 5 11 2767

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures