Sequence Similarity Clusters for the Entities in PDB 1APY

Entity #1 | Chains: A,C
ASPARTYLGLUCOSAMINIDASE protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22725
95 % 1 2 19585 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 19063
70 % 1 2 17616
50 % 1 2 15299
40 % 1 2 13613
30 % 1 2 11663
Entity #2 | Chains: B,D
ASPARTYLGLUCOSAMINIDASE protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23275
95 % 1 2 19989 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 19445
70 % 1 2 17937
50 % 1 2 15568
40 % 1 2 13856
30 % 4 10 2894

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures