Sequence Similarity Clusters for the Entities in PDB 1APU

Entity #1 | Chains: E
PROTEIN (PENICILLOPEPSIN) protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 14 4074
95 % 10 14 4883 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 14 4908
70 % 10 14 4807
50 % 488 548 63
40 % 488 556 81
30 % 501 737 31
Entity #2 | Chains: I
PEPSTATIN ANALOGUE ISOVALERYL-VAL-VAL-STA-O-ET protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures