Sequence Similarity Clusters for the Entities in PDB 1APM

Entity #1 | Chains: E
cAMP-DEPENDENT PROTEIN KINASE protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 67 515
95 % 124 253 123 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 0.9
PDBFlex
90 % 124 254 126
70 % 124 254 146
50 % 124 254 173
40 % 147 340 132
30 % 1283 4337 2
Entity #2 | Chains: I
PEPTIDE INHIBITOR PKI(5-24) protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 161 179
95 % 74 161 222 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.7
PDBFlex
90 % 74 161 232
70 % 74 161 253
50 % 74 161 280
40 % 74 161 311
30 % 74 161 321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures