Sequence Similarity Clusters for the Entities in PDB 1APM

Entity #1 | Chains: E
cAMP-DEPENDENT PROTEIN KINASE protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55568
95 % 77 202 137 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.9
PDBFlex
90 % 77 203 144
70 % 77 203 167
50 % 77 203 197
40 % 77 203 212
30 % 1126 3966 2
Entity #2 | Chains: I
PEPTIDE INHIBITOR PKI(5-24) protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 126 199
95 % 51 126 264 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.7
PDBFlex
90 % 66 152 236
70 % 66 152 269
50 % 66 152 290
40 % 66 152 310
30 % 66 152 315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures