Sequence Similarity Clusters for the Entities in PDB 1AP9

Entity #1 | Chains: A
BACTERIORHODOPSIN protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 77 384
95 % 96 120 259 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 97 121 274
70 % 97 121 312
50 % 109 136 271
40 % 109 136 285
30 % 156 194 180

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures