Sequence Similarity Clusters for the Entities in PDB 1AP9

Entity #1 | Chains: A
BACTERIORHODOPSIN protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 77 325
95 % 96 120 238 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.8
PDBFlex
90 % 97 121 252
70 % 97 121 283
50 % 109 136 257
40 % 109 136 273
30 % 156 194 173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.