Sequence Similarity Clusters for the Entities in PDB 1AP2

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY C219 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15754
95 % 2 3 14777 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 5 10552
70 % 104 191 72
50 % 162 305 21
40 % 480 916 5
30 % 539 1042 7
Entity #2 | Chains: B,D
MONOCLONAL ANTIBODY C219 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23260
95 % 2 3 14729 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 3 14460
70 % 31 82 259
50 % 298 566 7
40 % 481 916 5
30 % 540 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.