Sequence Similarity Clusters for the Entities in PDB 1AP2

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY C219 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29435
95 % 2 2 25705 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 4 15386
70 % 113 215 66
50 % 164 317 23
40 % 185 361 27
30 % 3120 7175 1
Entity #2 | Chains: B,D
MONOCLONAL ANTIBODY C219 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36446
95 % 2 2 25643 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 24751
70 % 33 87 261
50 % 316 609 6
40 % 2568 5756 1
30 % 3121 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures