Sequence Similarity Clusters for the Entities in PDB 1AP2

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY C219 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15965
95 % 2 3 14961 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 5 10671
70 % 104 191 72
50 % 164 308 21
40 % 489 933 5
30 % 550 1061 7
Entity #2 | Chains: B,D
MONOCLONAL ANTIBODY C219 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23546
95 % 2 3 14911 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 3 14642
70 % 33 85 260
50 % 305 580 7
40 % 490 933 5
30 % 551 1061 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures