Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45203
95 % 5 12 2312 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 12 2376
70 % 5 12 2369
50 % 7 14 1956
40 % 7 14 1950
30 % 7 14 1878
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 1984
95 % 9 17 2317 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 1.6
PDBFlex
90 % 10 15 2309
70 % 10 15 2309
50 % 10 15 2286
40 % 10 15 2267
30 % 10 15 2172
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 74 165
95 % 77 140 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 81 148 79
70 % 83 154 90
50 % 89 164 120
40 % 89 164 138
30 % 89 164 150
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2861
95 % 7 14 1543 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 7 14 1568
70 % 8 15 1389
50 % 8 15 1442
40 % 8 15 1454
30 % 8 15 1431

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.