Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44174
95 % 5 12 2242
90 % 5 12 2309
70 % 5 12 2300
50 % 7 14 1909
40 % 7 14 1910
30 % 7 14 1835
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 13 1909
95 % 9 14 2248
90 % 10 15 2241
70 % 10 15 2241
50 % 10 15 2218
40 % 10 15 2211
30 % 10 15 2114
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 74 164
95 % 76 139 86
90 % 80 147 80
70 % 82 153 88
50 % 88 163 117
40 % 88 163 138
30 % 88 163 150
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 2785
95 % 7 14 1486
90 % 7 14 1512
70 % 8 15 1359
50 % 8 15 1414
40 % 8 15 1425
30 % 8 15 1400

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.