Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40114
95 % 4 11 2243
90 % 4 11 2281
70 % 4 11 2288
50 % 6 13 1842
40 % 6 13 1858
30 % 6 13 1772
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 1818
95 % 8 13 2248
90 % 9 14 2213
70 % 9 14 2223
50 % 9 14 2221
40 % 9 14 2212
30 % 9 14 2090
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 66 129
95 % 63 114 112
90 % 67 123 106
70 % 68 127 106
50 % 71 134 129
40 % 71 134 143
30 % 71 134 162
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5716
95 % 5 11 1823
90 % 5 11 1869
70 % 6 12 1583
50 % 6 12 1626
40 % 6 12 1660
30 % 6 12 1601

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.