Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41260
95 % 4 11 2331
90 % 4 11 2375
70 % 4 11 2374
50 % 6 13 1901
40 % 6 13 1912
30 % 6 13 1834
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 1901
95 % 8 13 2338
90 % 9 14 2295
70 % 9 14 2299
50 % 9 14 2293
40 % 9 14 2277
30 % 9 14 2150
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 68 146
95 % 67 123 111
90 % 71 132 104
70 % 72 136 97
50 % 78 146 124
40 % 78 146 142
30 % 78 146 154
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 3042
95 % 5 12 1447
90 % 5 12 1479
70 % 6 13 1331
50 % 6 13 1384
40 % 6 13 1407
30 % 6 13 1386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.