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COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT
Sequence Clustering and Redundancy Reduction Results
1AOI
Sequence Clusters for the Sequence Entities in PDB 1AOI
Entity #1: Chains: I,J - PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - HISTONE H3 protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 34376
95% 1 2 15112
90% 1 2 14744
70% 1 2 13692
50% 1 2 12003
40% 1 2 10763
30% 1 2 9313
Entity #3: Chains: B,F - HISTONE H4 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 8 2550
95% 5 9 3001
90% 6 10 2736
70% 6 10 2752
50% 6 10 2768
40% 6 10 2710
30% 6 10 2525
Entity #4: Chains: C,G - HISTONE H2A protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 55 131
95% 45 84 86
90% 48 90 91
70% 48 93 106
50% 50 99 131
40% 50 99 159
30% 50 99 183
Entity #5: Chains: D,H - HISTONE H2B protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17668
95% 2 7 2678
90% 2 7 2729
70% 2 7 2745
50% 2 7 2762
40% 2 7 2705
30% 2 7 2520
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.