Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40649
95 % 4 11 2285
90 % 4 11 2324
70 % 4 11 2322
50 % 6 13 1868
40 % 6 13 1885
30 % 6 13 1799
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 1857
95 % 8 13 2291
90 % 9 14 2249
70 % 9 14 2253
50 % 9 14 2254
40 % 9 14 2249
30 % 9 14 2119
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 67 127
95 % 65 119 112
90 % 69 128 108
70 % 70 132 112
50 % 73 139 128
40 % 73 139 142
30 % 73 139 161
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5803
95 % 5 11 1853
90 % 5 11 1898
70 % 6 12 1606
50 % 6 12 1651
40 % 6 12 1680
30 % 6 12 1625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.