Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39255
95 % 1 4 8217
90 % 1 4 8138
70 % 1 4 7772
50 % 1 4 7084
40 % 1 4 6526
30 % 1 4 5787
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 1761
95 % 8 13 2197
90 % 9 14 2166
70 % 9 14 2177
50 % 9 14 2179
40 % 9 14 2163
30 % 9 14 2037
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 64 146
95 % 62 109 115
90 % 66 118 110
70 % 67 122 105
50 % 69 128 135
40 % 69 128 152
30 % 69 128 168
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5581
95 % 4 10 2194
90 % 4 10 2234
70 % 5 11 1849
50 % 5 11 1876
40 % 5 11 1894
30 % 5 11 1798

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.