Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45748
95 % 5 12 2336 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 12 2399
70 % 5 12 2387
50 % 7 14 1973
40 % 7 14 1968
30 % 7 14 1899
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 2005
95 % 9 14 2340 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.1
PDBFlex
90 % 10 15 2331
70 % 10 15 2325
50 % 10 15 2303
40 % 10 15 2290
30 % 10 15 2191
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 78 158
95 % 79 147 77 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.6
PDBFlex
90 % 83 155 78
70 % 85 161 87
50 % 91 171 111
40 % 91 171 133
30 % 91 171 143
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2891
95 % 7 14 1560 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 7 14 1587
70 % 8 15 1402
50 % 8 15 1450
40 % 8 15 1465
30 % 8 15 1442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.