Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46332
95 % 5 12 2378 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 5 12 2441
70 % 5 12 2430
50 % 7 14 2005
40 % 7 14 1995
30 % 7 14 1918
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 2047
95 % 9 14 2382 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 2.2
PDBFlex
90 % 10 15 2368
70 % 10 15 2365
50 % 10 15 2341
40 % 10 15 2325
30 % 10 15 2218
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 79 161
95 % 82 150 81 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 86 158 78
70 % 88 164 89
50 % 94 174 111
40 % 94 174 135
30 % 94 174 141
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2951
95 % 7 14 1584 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 7 14 1613
70 % 8 15 1424
50 % 8 15 1477
40 % 8 15 1485
30 % 8 15 1456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.