Sequence Similarity Clusters for the Entities in PDB 1AO7

Entity #1 | Chains: A
HLA-A 0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 181 204 52
95 % 228 255 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 275 308 35
70 % 633 727 6
50 % 635 732 6
40 % 675 783 10
30 % 747 907 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29976
95 % 579 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 588 677 4
70 % 770 922 4
50 % 784 944 3
40 % 784 944 7
30 % 784 944 12
Entity #3 | Chains: C
TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T CELL RECEPTOR ALPHA protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 6589
95 % 11 14 4220 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 26 33 1293
70 % 186 274 49
50 % 202 305 82
40 % 202 305 99
30 % 3907 5705 1
Entity #5 | Chains: E
T CELL RECEPTOR BETA protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15414
95 % 25 29 1752 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 60 76 334
70 % 210 314 28
50 % 210 317 73
40 % 210 317 94
30 % 3908 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures