Sequence Similarity Clusters for the Entities in PDB 1AO7

Entity #1 | Chains: A
HLA-A 0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 181 204 53
95 % 228 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 275 309 36
70 % 637 732 6
50 % 639 737 7
40 % 679 788 10
30 % 755 919 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30574
95 % 585 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 594 685 4
70 % 780 936 4
50 % 794 958 3
40 % 794 958 7
30 % 794 958 12
Entity #3 | Chains: C
TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T CELL RECEPTOR ALPHA protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 6733
95 % 11 14 4320 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 26 33 1319
70 % 196 286 56
50 % 228 334 76
40 % 228 334 98
30 % 4089 5941 1
Entity #5 | Chains: E
T CELL RECEPTOR BETA protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15784
95 % 25 29 1822 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 60 76 342
70 % 236 343 25
50 % 236 346 67
40 % 236 346 89
30 % 4090 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures