Sequence Similarity Clusters for the Entities in PDB 1AMF

Entity #1 | Chains: A
MOLYBDATE TRANSPORT PROTEIN MODA protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15734
95 % 3 5 9419 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 5 9326
70 % 3 5 8936
50 % 5 7 4645
40 % 6 8 4133
30 % 6 9 3050

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures