Sequence Similarity Clusters for the Entities in PDB 1AM9

Entity #1 | Chains: E,G
DNA (5'-D(*TP*TP*GP*CP*AP*GP*TP*GP*GP*GP*GP*TP*GP*AP*TP*CP*T )-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA (5'-D(*CP*AP*TP*GP*AP*GP*AP*TP*CP*AP*CP*CP*CP*CP*AP*CP*T P*GP*CP*AP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
PROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A) protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24353
95 % 1 1 20775 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 1 20198
70 % 1 1 18559
50 % 1 1 16102
40 % 1 1 14356
30 % 1 1 12284

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures