Sequence Similarity Clusters for the Entities in PDB 1AM9

Entity #1 | Chains: E,G
DNA (5'-D(*TP*TP*GP*CP*AP*GP*TP*GP*GP*GP*GP*TP*GP*AP*TP*CP*T )-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA (5'-D(*CP*AP*TP*GP*AP*GP*AP*TP*CP*AP*CP*CP*CP*CP*AP*CP*T P*GP*CP*AP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
PROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A) protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23690
95 % 1 1 20191 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 1 19633
70 % 1 1 18085
50 % 1 1 15717
40 % 1 1 14024
30 % 1 1 11997

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.