Sequence Similarity Clusters for the Entities in PDB 1AM4

Entity #1 | Chains: A,B,C
P50-RHOGAP protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21578
95 % 3 3 14492 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 3 3 14221
70 % 3 3 13338
50 % 3 3 11863
40 % 3 3 10748
30 % 3 3 9342
Entity #2 | Chains: D,E,F
CDC42HS protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6526
95 % 23 37 914 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 23 37 947
70 % 54 78 327
50 % 102 137 194
40 % 103 138 208
30 % 614 782 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.