Sequence Similarity Clusters for the Entities in PDB 1AM4

Entity #1 | Chains: A,B,C
P50-RHOGAP protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22109
95 % 3 3 14789 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 3 3 14520
70 % 3 3 13612
50 % 3 3 12094
40 % 3 3 10957
30 % 3 3 9524
Entity #2 | Chains: D,E,F
CDC42HS protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6675
95 % 24 39 904 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 24 39 934
70 % 56 82 326
50 % 107 143 193
40 % 108 144 203
30 % 644 817 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures