Sequence Similarity Clusters for the Entities in PDB 1AM4

Entity #1 | Chains: A,B,C
P50-RHOGAP protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19890
95 % 3 3 13399
90 % 3 3 13153
70 % 3 3 12336
50 % 3 3 11028
40 % 3 3 10002
30 % 3 3 8688
Entity #2 | Chains: D,E,F
CDC42HS protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5955
95 % 23 37 825
90 % 23 37 861
70 % 53 77 291
50 % 96 131 183
40 % 97 132 199
30 % 568 727 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.