Sequence Similarity Clusters for the Entities in PDB 1AM4

Entity #1 | Chains: A,B,C
P50-RHOGAP protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22434
95 % 3 3 15000 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 3 3 14721
70 % 3 3 13793
50 % 3 3 12248
40 % 3 3 11084
30 % 3 3 9637
Entity #2 | Chains: D,E,F
CDC42HS protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6768
95 % 24 39 911 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 24 39 943
70 % 56 82 332
50 % 107 143 196
40 % 108 144 205
30 % 649 822 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures