Sequence Similarity Clusters for the Entities in PDB 1AL0

Entity #1 | Chains: 1,2,3,4
SCAFFOLDING PROTEIN GPD protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4776
95 % 3 4 5098 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 5.4
PDBFlex
90 % 3 4 5126
70 % 3 4 4997
50 % 3 4 4888
40 % 3 4 4612
30 % 3 4 4148
Entity #2 | Chains: F
CAPSID PROTEIN GPF protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25383
95 % 3 3 22411 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 3 3 22616
70 % 5 7 10142
50 % 6 8 8474
40 % 6 8 7722
30 % 6 8 6690
Entity #3 | Chains: G
SPIKE PROTEIN GPG protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25384
95 % 3 3 22412 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 21712
70 % 3 3 19856
50 % 3 3 17137
40 % 4 4 11737
30 % 6 7 7017
Entity #4 | Chains: B
SCAFFOLDING PROTEIN GPB protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44394
95 % 2 2 37082 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 35394
70 % 2 2 29224
50 % 2 2 24973
40 % 2 2 21932
30 % 2 2 18299

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures