Sequence Similarity Clusters for the Entities in PDB 1AL0

Entity #1 | Chains: 1,2,3,4
SCAFFOLDING PROTEIN GPD protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4089
95 % 3 4 4863 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 5.8
PDBFlex
90 % 3 4 4883
70 % 3 4 4764
50 % 3 4 4570
40 % 3 4 4342
30 % 3 4 3988
Entity #2 | Chains: F
CAPSID PROTEIN GPF protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33064
95 % 3 3 21733 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 3 3 21120
70 % 5 6 10622
50 % 6 7 8645
40 % 6 7 7924
30 % 6 7 7005
Entity #3 | Chains: G
SPIKE PROTEIN GPG protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28362
95 % 3 3 23576 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 22800
70 % 3 3 20798
50 % 3 3 18000
40 % 3 3 16048
30 % 6 7 7248
Entity #4 | Chains: B
SCAFFOLDING PROTEIN GPB protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45968
95 % 2 2 34411 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 32891
70 % 2 2 29281
50 % 2 2 25000
40 % 2 2 22003
30 % 2 2 18632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.