Sequence Similarity Clusters for the Entities in PDB 1AL0

Entity #1 | Chains: 1,2,3,4
SCAFFOLDING PROTEIN GPD protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 3990
95 % 3 4 4765
90 % 3 4 4781
70 % 3 4 4689
50 % 3 4 4510
40 % 3 4 4282
30 % 3 4 3936
Entity #2 | Chains: F
CAPSID PROTEIN GPF protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 32575
95 % 3 3 21441
90 % 3 3 20834
70 % 5 6 10488
50 % 6 7 8541
40 % 6 7 7826
30 % 6 7 6918
Entity #3 | Chains: G
SPIKE PROTEIN GPG protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27963
95 % 3 3 23248
90 % 3 3 22490
70 % 3 3 20528
50 % 3 3 17782
40 % 3 3 15855
30 % 6 7 7157
Entity #4 | Chains: B
SCAFFOLDING PROTEIN GPB protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45336
95 % 2 2 33947
90 % 2 2 32459
70 % 2 2 28931
50 % 2 2 24720
40 % 2 2 21752
30 % 2 2 18413

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.