Sequence Similarity Clusters for the Entities in PDB 1AL0

Entity #1 | Chains: 1,2,3,4
SCAFFOLDING PROTEIN GPD protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 3842
95 % 3 4 4592
90 % 3 4 4605
70 % 3 4 4501
50 % 3 4 4349
40 % 3 4 4145
30 % 3 4 3805
Entity #2 | Chains: F
CAPSID PROTEIN GPF protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 31499
95 % 3 3 20693
90 % 3 3 20128
70 % 5 6 10108
50 % 6 7 8264
40 % 6 7 7573
30 % 6 7 6690
Entity #3 | Chains: G
SPIKE PROTEIN GPG protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27034
95 % 3 3 22466
90 % 3 3 21747
70 % 3 3 19940
50 % 3 3 17311
40 % 3 3 15440
30 % 6 7 6915
Entity #4 | Chains: B
SCAFFOLDING PROTEIN GPB protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43977
95 % 2 2 32922
90 % 2 2 31512
70 % 2 2 28145
50 % 2 2 24091
40 % 2 2 21196
30 % 2 2 17938

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.