Sequence Similarity Clusters for the Entities in PDB 1AKS

Entity #1 | Chains: A
ALPHA TRYPSIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 16248
95 % 2 5 15099
90 % 2 5 14800
70 % 2 5 13849
50 % 2 5 12743
40 % 16 45 1144
30 % 17 53 982
Entity #2 | Chains: B
ALPHA TRYPSIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 11927
95 % 3 6 11510 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 6 11348
70 % 3 6 10723
50 % 17 46 1121
40 % 18 55 953
30 % 18 55 951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures