Sequence Similarity Clusters for the Entities in PDB 1AKS

Entity #1 | Chains: A
ALPHA TRYPSIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45597
95 % 1 2 34180
90 % 1 2 32676
70 % 1 2 29114
50 % 1 2 24855
40 % 15 42 1154
30 % 16 50 994
Entity #2 | Chains: B
ALPHA TRYPSIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47198
95 % 2 3 24486 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 23696
70 % 2 3 21560
50 % 16 43 1122
40 % 17 52 988
30 % 17 52 962

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.