Sequence Similarity Clusters for the Entities in PDB 1AKS

Entity #1 | Chains: A
ALPHA TRYPSIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46162
95 % 1 2 34587
90 % 1 2 33044
70 % 1 2 29420
50 % 1 2 25117
40 % 15 42 1168
30 % 16 50 1003
Entity #2 | Chains: B
ALPHA TRYPSIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47776
95 % 2 3 24789 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 23976
70 % 2 3 21795
50 % 16 43 1133
40 % 17 52 994
30 % 17 52 972

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures