Sequence Similarity Clusters for the Entities in PDB 1AKM

Entity #1 | Chains: A,B,C
ORNITHINE TRANSCARBAMYLASE protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4406
95 % 3 3 4727 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 3 4553
70 % 3 3 4440
50 % 13 14 1092
40 % 35 38 476
30 % 134 143 151

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures