Sequence Similarity Clusters for the Entities in PDB 1AKJ

Entity #1 | Chains: A
MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 149 197 52
95 % 193 246 58
90 % 232 294 36
70 % 530 692 6
50 % 531 697 6
40 % 569 748 10
30 % 620 868 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 471 600 2
95 % 505 644 3
90 % 511 653 4
70 % 650 885 4
50 % 662 907 3
40 % 662 907 9
30 % 662 907 14
Entity #3 | Chains: C
HIV REVERSE TRANSCRIPTASE EPITOPE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
T-CELL CORECEPTOR CD8 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 10585
95 % 4 5 6394
90 % 4 5 6375
70 % 4 5 6225
50 % 6 7 4213
40 % 7 12 2188
30 % 7 12 2094

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.