Sequence Similarity Clusters for the Entities in PDB 1AKJ

Entity #1 | Chains: A
MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 204 53
95 % 199 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 240 309 36
70 % 554 732 6
50 % 555 737 7
40 % 593 788 10
30 % 650 919 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 487 632 2
95 % 521 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 527 685 4
70 % 679 936 4
50 % 691 958 3
40 % 691 958 7
30 % 691 958 12
Entity #3 | Chains: C
HIV REVERSE TRANSCRIPTASE EPITOPE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
T-CELL CORECEPTOR CD8 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11183
95 % 4 5 6708 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 5 6702
70 % 4 5 6529
50 % 6 7 4420
40 % 7 12 2308
30 % 7 12 2201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures