Sequence Similarity Clusters for the Entities in PDB 1AKJ

Entity #1 | Chains: A
MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 197 52
95 % 193 246 58 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 229 287 36
70 % 523 681 7
50 % 524 686 6
40 % 561 736 10
30 % 609 853 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 465 590 2
95 % 498 633 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 504 642 4
70 % 641 872 4
50 % 653 894 4
40 % 653 894 8
30 % 653 894 14
Entity #3 | Chains: C
HIV REVERSE TRANSCRIPTASE EPITOPE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
T-CELL CORECEPTOR CD8 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10440
95 % 4 5 6285 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 5 6269
70 % 4 5 6118
50 % 6 7 4150
40 % 7 12 2151
30 % 7 12 2063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.