Sequence Similarity Clusters for the Entities in PDB 1AKJ

Entity #1 | Chains: A
MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 204 51
95 % 198 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 237 302 35
70 % 544 716 6
50 % 545 721 6
40 % 583 772 10
30 % 637 896 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 479 616 2
95 % 513 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 519 669 4
70 % 666 912 4
50 % 678 934 3
40 % 678 934 7
30 % 678 934 12
Entity #3 | Chains: C
HIV REVERSE TRANSCRIPTASE EPITOPE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
T-CELL CORECEPTOR CD8 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10750
95 % 4 5 6489 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 5 6471
70 % 4 5 6316
50 % 6 7 4266
40 % 7 12 2209
30 % 7 12 2113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.