Sequence Similarity Clusters for the Entities in PDB 1AKJ

Entity #1 | Chains: A
MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 204 52
95 % 199 255 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 240 308 35
70 % 551 727 6
50 % 552 732 6
40 % 590 783 10
30 % 644 907 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 483 624 2
95 % 517 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 523 677 4
70 % 671 922 4
50 % 683 944 3
40 % 683 944 7
30 % 683 944 12
Entity #3 | Chains: C
HIV REVERSE TRANSCRIPTASE EPITOPE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,E
T-CELL CORECEPTOR CD8 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10918
95 % 4 5 6577 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 5 6562
70 % 4 5 6402
50 % 6 7 4328
40 % 7 12 2252
30 % 7 12 2147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures