Sequence Similarity Clusters for the Entities in PDB 1AKH

Entity #1 | Chains: C
DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*C P*AP*TP*CP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*A P*CP*AP*TP*G)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (MATING-TYPE PROTEIN A-1) protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72190
95 % 1 3 24696
90 % 1 3 23897
70 % 1 3 21756
50 % 1 3 18847
40 % 1 3 16778
30 % 1 3 14387
Entity #4 | Chains: B
PROTEIN (MATING-TYPE PROTEIN ALPHA-2) protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24052
95 % 1 4 14937 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 4 14659
70 % 1 4 13747
50 % 1 4 12198
40 % 1 4 11061
30 % 1 4 9609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.