Sequence Similarity Clusters for the Entities in PDB 1AK4

Entity #1 | Chains: A,B
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 80 220
95 % 114 128 152 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 115 129 161
70 % 172 187 145
50 % 213 235 121
40 % 220 244 137
30 % 227 254 142
Entity #2 | Chains: C,D
HIV-1 CAPSID protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 263
95 % 24 45 236 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 25 46 239
70 % 25 46 268
50 % 27 50 281
40 % 27 50 313
30 % 30 53 312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures