Sequence Similarity Clusters for the Entities in PDB 1AK4

Entity #1 | Chains: A,B
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 98 112 116
95 % 112 126 146 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 113 127 155
70 % 169 184 131
50 % 205 223 113
40 % 217 241 129
30 % 224 251 131
Entity #2 | Chains: C,D
HIV-1 CAPSID protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 201
95 % 24 45 221 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 25 46 227
70 % 25 46 257
50 % 27 50 263
40 % 27 50 278
30 % 30 53 279

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.