Sequence Similarity Clusters for the Entities in PDB 1AK4

Entity #1 | Chains: A,B
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 112 117
95 % 112 126 148
90 % 113 127 158
70 % 169 184 137
50 % 205 223 115
40 % 217 241 135
30 % 224 251 133
Entity #2 | Chains: C,D
HIV-1 CAPSID protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 35 205
95 % 24 45 223
90 % 25 46 229
70 % 25 46 263
50 % 27 50 267
40 % 27 50 281
30 % 30 53 283

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures