Sequence Similarity Clusters for the Entities in PDB 1AK4

Entity #1 | Chains: A,B
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 80 219
95 % 114 128 150 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 115 129 159
70 % 171 186 143
50 % 212 234 120
40 % 219 243 136
30 % 226 253 143
Entity #2 | Chains: C,D
HIV-1 CAPSID protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 263
95 % 24 45 231 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 25 46 235
70 % 25 46 265
50 % 27 50 274
40 % 27 50 304
30 % 30 53 309

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures