Sequence Similarity Clusters for the Entities in PDB 1AK4

Entity #1 | Chains: A,B
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 101 148
95 % 101 115 148 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 102 116 157
70 % 158 173 134
50 % 194 211 112
40 % 206 228 128
30 % 213 238 136
Entity #2 | Chains: C,D
HIV-1 CAPSID protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 192
95 % 24 45 207 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 25 46 215
70 % 25 46 244
50 % 27 50 250
40 % 27 50 268
30 % 30 53 267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.