Sequence Similarity Clusters for the Entities in PDB 1AJQ

Entity #1 | Chains: A
PENICILLIN AMIDOHYDROLASE protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 3952
95 % 7 21 3089 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 7 21 3145
70 % 7 21 3086
50 % 7 22 2905
40 % 7 22 2827
30 % 7 22 2612
Entity #2 | Chains: B
PENICILLIN AMIDOHYDROLASE protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 20 2961
95 % 10 24 2604 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 10 24 2672
70 % 10 26 1883
50 % 10 27 1844
40 % 10 29 1717
30 % 10 29 1690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures