Sequence Similarity Clusters for the Entities in PDB 1AJP

Entity #1 | Chains: A
PENICILLIN AMIDOHYDROLASE protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 20 2619
95 % 8 21 3060 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 21 3107
70 % 8 21 3073
50 % 8 22 2898
40 % 8 22 2847
30 % 8 22 2665
Entity #2 | Chains: B
PENICILLIN AMIDOHYDROLASE protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10464
95 % 11 24 2501 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 11 24 2563
70 % 11 26 1835
50 % 11 27 1808
40 % 11 29 1700
30 % 11 29 1672

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures