Sequence Similarity Clusters for the Entities in PDB 1AJ9

Entity #1 | Chains: A
HEMOGLOBIN (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 123 260 23
95 % 128 271 31 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 128 271 33
70 % 148 339 20
50 % 356 769 5
40 % 361 774 8
30 % 814 1331 7
Entity #2 | Chains: B
HEMOGLOBIN (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 220 46
95 % 129 256 33 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 132 261 35
70 % 163 354 17
50 % 357 769 5
40 % 362 774 8
30 % 815 1331 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures