Sequence Similarity Clusters for the Entities in PDB 1AJ9

Entity #1 | Chains: A
HEMOGLOBIN (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 122 256 12
95 % 127 267 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 127 267 19
70 % 146 334 17
50 % 352 759 4
40 % 357 764 7
30 % 800 1310 6
Entity #2 | Chains: B
HEMOGLOBIN (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 217 42
95 % 129 253 20 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 132 258 20
70 % 161 349 14
50 % 353 759 4
40 % 358 764 7
30 % 801 1310 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures