Sequence Similarity Clusters for the Entities in PDB 1AJ9

Entity #1 | Chains: A
HEMOGLOBIN (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 123 258 12
95 % 128 269 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 128 269 19
70 % 148 337 18
50 % 356 765 4
40 % 361 770 7
30 % 810 1323 6
Entity #2 | Chains: B
HEMOGLOBIN (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 218 43
95 % 129 254 25 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 132 259 20
70 % 163 352 15
50 % 357 765 4
40 % 362 770 7
30 % 811 1323 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures