Sequence Similarity Clusters for the Entities in PDB 1AJ9

Entity #1 | Chains: A
HEMOGLOBIN (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67860
95 % 119 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 120 251 21
70 % 144 332 16
50 % 348 754 4
40 % 353 759 8
30 % 769 1226 8
Entity #2 | Chains: B
HEMOGLOBIN (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 169 51
95 % 127 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 130 255 19
70 % 159 346 14
50 % 349 754 4
40 % 354 759 8
30 % 770 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures