Sequence Similarity Clusters for the Entities in PDB 1AJ7

Entity #1 | Chains: L
IMMUNOGLOBULIN 48G7 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41423
95 % 8 9 7920 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 3.0
PDBFlex
90 % 236 746 3
70 % 768 2392 1
50 % 1574 4843 1
40 % 1574 4843 1
30 % 1767 5705 1
Entity #2 | Chains: H
IMMUNOGLOBULIN 48G7 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41144
95 % 3 4 18693 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 3.9
PDBFlex
90 % 3 4 18256
70 % 760 2342 2
50 % 1575 4843 1
40 % 1575 4843 1
30 % 1768 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures