Sequence Similarity Clusters for the Entities in PDB 1AJ7

Entity #1 | Chains: L
IMMUNOGLOBULIN 48G7 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42292
95 % 8 9 8102 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 3.0
PDBFlex
90 % 259 791 2
70 % 810 2479 1
50 % 1659 5021 1
40 % 1659 5021 1
30 % 1893 5951 1
Entity #2 | Chains: H
IMMUNOGLOBULIN 48G7 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42011
95 % 3 4 19113 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 3.9
PDBFlex
90 % 3 4 18650
70 % 802 2429 2
50 % 1660 5021 1
40 % 1660 5021 1
30 % 1894 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures