Sequence Similarity Clusters for the Entities in PDB 1AIS

Entity #1 | Chains: C
DNA (5'-D(*AP*AP*CP*TP*TP*AP*CP*TP*TP*TP*(5IU)P*(5IU)P*AP*AP*AP*GP*C)-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*GP*CP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*AP*AP*GP*TP*T )-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (TATA-BINDING PROTEIN) protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21787
95 % 1 3 18856 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 3 18375
70 % 1 3 16965
50 % 1 3 14739
40 % 18 41 840
30 % 19 42 781
Entity #4 | Chains: B
PROTEIN (TRANSCRIPTION INITIATION FACTOR IIB) protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41625
95 % 1 2 31608 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 1 2 30239
70 % 1 2 27026
50 % 1 2 23055
40 % 1 2 20294
30 % 1 2 17198

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.