Sequence Similarity Clusters for the Entities in PDB 1AIS

Entity #1 | Chains: C
DNA (5'-D(*AP*AP*CP*TP*TP*AP*CP*TP*TP*TP*(5IU)P*(5IU)P*AP*AP*AP*GP*C)-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*GP*CP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*AP*AP*GP*TP*T )-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (TATA-BINDING PROTEIN) protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 19855
95 % 1 3 17208
90 % 1 3 16780
70 % 1 3 15570
50 % 1 3 13602
40 % 16 36 854
30 % 19 41 716
Entity #4 | Chains: B
PROTEIN (TRANSCRIPTION INITIATION FACTOR IIB) protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38133
95 % 1 2 28954
90 % 1 2 27756
70 % 1 2 24944
50 % 1 2 21373
40 % 1 2 18810
30 % 1 2 15922

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.