Sequence Similarity Clusters for the Entities in PDB 1AIP

Entity #1 | Chains: A,B,E,F
ELONGATION FACTOR TU protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17201
95 % 15 25 1266 Flexibility: Medium
Max RMSD: 12.2, Avg RMSD: 5.6
PDBFlex
90 % 15 26 1265
70 % 32 65 426
50 % 34 67 485
40 % 34 67 522
30 % 50 92 371
Entity #2 | Chains: C,D,G,H
ELONGATION FACTOR TS protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20856
95 % 1 1 18068 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 1 17610
70 % 1 1 16314
50 % 1 1 14203
40 % 1 1 12644
30 % 1 1 10814

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.