Sequence Similarity Clusters for the Entities in PDB 1AIP

Entity #1 | Chains: A,B,E,F
ELONGATION FACTOR TU protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18649
95 % 15 25 1364 Flexibility: Medium
Max RMSD: 12.2, Avg RMSD: 5.7
PDBFlex
90 % 15 26 1346
70 % 34 68 463
50 % 36 70 491
40 % 36 70 532
30 % 53 96 404
Entity #2 | Chains: C,D,G,H
ELONGATION FACTOR TS protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22582
95 % 1 1 19473 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 1 18956
70 % 1 1 17505
50 % 1 1 15181
40 % 1 1 13500
30 % 1 1 11549

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures