Sequence Similarity Clusters for the Entities in PDB 1AIP

Entity #1 | Chains: A,B,E,F
ELONGATION FACTOR TU protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18345
95 % 15 25 1340 Flexibility: Medium
Max RMSD: 12.2, Avg RMSD: 5.7
PDBFlex
90 % 15 26 1336
70 % 34 68 446
50 % 36 70 484
40 % 36 70 527
30 % 53 96 396
Entity #2 | Chains: C,D,G,H
ELONGATION FACTOR TS protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22218
95 % 1 1 19182 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 1 18680
70 % 1 1 17262
50 % 1 1 14980
40 % 1 1 13329
30 % 1 1 11406

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures