Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2902
95 % 5 11 2576
90 % 5 11 2624
70 % 5 11 2609
50 % 5 12 2209
40 % 5 12 2208
30 % 5 12 2106
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 23328
95 % 2 5 12813
90 % 3 6 7606
70 % 3 6 7349
50 % 11 22 1479
40 % 11 23 1424
30 % 11 23 1399

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.