Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 3045
95 % 5 11 2688 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 11 2732
70 % 5 11 2713
50 % 5 12 2312
40 % 5 12 2300
30 % 5 12 2197
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24476
95 % 2 5 13430
90 % 3 6 7989
70 % 3 6 7735
50 % 11 22 1534
40 % 11 23 1474
30 % 11 23 1449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.