Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 1942
95 % 7 13 2249 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 7 14 2015
70 % 7 14 2022
50 % 7 15 1827
40 % 7 15 1815
30 % 7 15 1766
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 16679
95 % 2 5 11934
90 % 3 6 7909
70 % 3 6 7907
50 % 11 23 1522
40 % 11 23 1529
30 % 11 23 1522

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures