Sequence Similarity Clusters for the Entities in PDB 1AIJ

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 68 433
95 % 21 97 345 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 21 97 371
70 % 21 97 407
50 % 32 129 340
40 % 32 129 369
30 % 32 129 369
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 62 483
95 % 21 97 344 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 21 97 370
70 % 21 97 405
50 % 32 129 339
40 % 32 129 368
30 % 32 129 368
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 96 250
95 % 21 97 346 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 21 97 372
70 % 21 97 408
50 % 21 97 482
40 % 32 129 370
30 % 32 129 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.