Sequence Similarity Clusters for the Entities in PDB 1AIJ

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 68 434
95 % 21 97 352 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 21 97 376
70 % 21 97 412
50 % 32 129 349
40 % 32 129 376
30 % 32 129 376
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 62 487
95 % 21 97 351 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 21 97 375
70 % 21 97 410
50 % 32 129 348
40 % 32 129 375
30 % 32 129 375
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 96 256
95 % 21 97 353 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 21 97 377
70 % 21 97 413
50 % 21 97 489
40 % 32 129 377
30 % 32 129 377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.