Sequence Similarity Clusters for the Entities in PDB 1AIJ

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 403
95 % 21 96 333
90 % 21 96 361
70 % 21 96 399
50 % 31 125 329
40 % 31 125 351
30 % 31 125 359
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 61 459
95 % 21 96 332
90 % 21 96 359
70 % 21 96 397
50 % 31 125 328
40 % 31 125 350
30 % 31 125 358
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 95 243
95 % 21 96 335
90 % 21 96 362
70 % 21 96 400
50 % 21 96 467
40 % 31 125 352
30 % 31 125 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.