Sequence Similarity Clusters for the Entities in PDB 1AIJ

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 68 405
95 % 21 97 334
90 % 21 97 360
70 % 21 97 398
50 % 31 126 327
40 % 31 126 353
30 % 31 126 362
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 62 457
95 % 21 97 333
90 % 21 97 359
70 % 21 97 396
50 % 31 126 326
40 % 31 126 351
30 % 31 126 360
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 96 241
95 % 21 97 335
90 % 21 97 361
70 % 21 97 399
50 % 21 97 467
40 % 31 126 354
30 % 31 126 363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.