Sequence Similarity Clusters for the Entities in PDB 1AIG

Entity #1 | Chains: L,N
PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 68 386
95 % 51 96 325
90 % 51 96 352
70 % 51 96 390
50 % 67 123 335
40 % 67 123 364
30 % 67 123 365
Entity #2 | Chains: M,O
PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 61 446
95 % 51 96 324
90 % 51 96 350
70 % 51 96 389
50 % 67 123 334
40 % 67 123 363
30 % 67 123 364
Entity #3 | Chains: H,P
PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 95 232
95 % 51 96 327
90 % 51 96 353
70 % 51 96 391
50 % 51 96 459
40 % 67 123 365
30 % 67 123 366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.