Sequence Similarity Clusters for the Entities in PDB 1AIG

Entity #1 | Chains: L,N
PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 68 434
95 % 51 97 349
90 % 51 97 374
70 % 51 97 410
50 % 69 129 350
40 % 69 129 376
30 % 69 129 376
Entity #2 | Chains: M,O
PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 62 485
95 % 51 97 348
90 % 51 97 373
70 % 51 97 408
50 % 69 129 349
40 % 69 129 375
30 % 69 129 375
Entity #3 | Chains: H,P
PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 96 255
95 % 51 97 350
90 % 51 97 375
70 % 51 97 411
50 % 51 97 489
40 % 69 129 377
30 % 69 129 377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.