Sequence Similarity Clusters for the Entities in PDB 1AIF

Entity #1 | Chains: A,L
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28336
95 % 3 3 18852 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 79 148 140
70 % 1768 2416 1
50 % 3586 4892 1
40 % 3586 4892 1
30 % 4229 5759 1
Entity #2 | Chains: B,H
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28257
95 % 2 2 23528 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 2 2 22773
70 % 1729 2366 2
50 % 3587 4892 1
40 % 3587 4892 1
30 % 4230 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures