Sequence Similarity Clusters for the Entities in PDB 1AIF

Entity #1 | Chains: A,L
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27550
95 % 3 3 18343 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 77 145 141
70 % 1669 2287 1
50 % 3388 4633 1
40 % 3388 4633 1
30 % 3996 5461 1
Entity #2 | Chains: B,H
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27472
95 % 2 2 22918 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 2 2 22208
70 % 1637 2244 2
50 % 3389 4633 1
40 % 3389 4633 1
30 % 3997 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.