Sequence Similarity Clusters for the Entities in PDB 1AIF

Entity #1 | Chains: A,L
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28779
95 % 3 3 19164 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 79 148 144
70 % 1814 2479 1
50 % 3681 5021 1
40 % 3681 5021 1
30 % 4384 5951 1
Entity #2 | Chains: B,H
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28700
95 % 2 2 23889 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 2 2 23118
70 % 1775 2429 2
50 % 3682 5021 1
40 % 3682 5021 1
30 % 4385 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures