Sequence Similarity Clusters for the Entities in PDB 1AID

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS PROTEASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 123 106
95 % 111 123 132 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 527 656 3
70 % 548 680 5
50 % 558 706 5
40 % 568 716 8
30 % 570 718 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures