Sequence Similarity Clusters for the Entities in PDB 1AI1

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40711
95 % 26 39 767 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 55 99 154
70 % 1606 2327 1
50 % 3256 4713 1
40 % 3256 4713 1
30 % 3832 5567 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40130
95 % 1 2 30730 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 29570
70 % 1569 2280 2
50 % 3257 4713 1
40 % 3257 4713 1
30 % 3833 5567 1
Entity #3 | Chains: P
AIB142 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 9976
95 % 5 6 10040
90 % 5 6 9919
70 % 13 15 3011
50 % 13 15 2962
40 % 13 15 2923
30 % 13 15 2736

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.