Sequence Similarity Clusters for the Entities in PDB 1AI1

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42145
95 % 27 40 777 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 59 105 152
70 % 1721 2474 1
50 % 3490 5011 1
40 % 3490 5011 1
30 % 4132 5941 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41542
95 % 1 2 31748 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 30520
70 % 1681 2424 2
50 % 3491 5011 1
40 % 3491 5011 1
30 % 4133 5941 1
Entity #3 | Chains: P
AIB142 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 10392
95 % 5 6 10396
90 % 5 6 10269
70 % 14 16 2850
50 % 14 16 2810
40 % 14 16 2760
30 % 14 16 2593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures