Sequence Similarity Clusters for the Entities in PDB 1AI1

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41330
95 % 26 39 786 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 56 101 157
70 % 1660 2392 1
50 % 3364 4843 1
40 % 3364 4843 1
30 % 3947 5705 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40736
95 % 1 2 31181 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 29993
70 % 1620 2342 2
50 % 3365 4843 1
40 % 3365 4843 1
30 % 3948 5705 1
Entity #3 | Chains: P
AIB142 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 10130
95 % 5 6 10171
90 % 5 6 10047
70 % 14 16 2785
50 % 14 16 2751
40 % 14 16 2707
30 % 14 16 2544

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures