Sequence Similarity Clusters for the Entities in PDB 1AHW

Entity #1 | Chains: A,D
IMMUNOGLOBULIN FAB 5G9 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28366
95 % 3 3 18883 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 26 2195
70 % 1836 2416 1
50 % 3724 4892 1
40 % 3724 4892 1
30 % 4394 5759 1
Entity #2 | Chains: B,E
IMMUNOGLOBULIN FAB 5G9 (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28367
95 % 3 3 18825 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 19 19 1748
70 % 1796 2366 2
50 % 3725 4892 1
40 % 3725 4892 1
30 % 4395 5759 1
Entity #3 | Chains: C,F
TISSUE FACTOR protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 39 974
95 % 39 40 1272 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 39 40 1304
70 % 40 41 1265
50 % 40 41 1324
40 % 40 41 1337
30 % 40 41 1313

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures