Sequence Similarity Clusters for the Entities in PDB 1AHW

Entity #1 | Chains: A,D
IMMUNOGLOBULIN FAB 5G9 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28769
95 % 3 3 19172 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 26 2233
70 % 1880 2474 1
50 % 3815 5011 1
40 % 3815 5011 1
30 % 4545 5941 1
Entity #2 | Chains: B,E
IMMUNOGLOBULIN FAB 5G9 (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28770
95 % 3 3 19111 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 19 19 1787
70 % 1840 2424 2
50 % 3816 5011 1
40 % 3816 5011 1
30 % 4546 5941 1
Entity #3 | Chains: C,F
TISSUE FACTOR protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 39 989
95 % 39 40 1287 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 39 40 1315
70 % 40 41 1281
50 % 40 41 1341
40 % 40 41 1353
30 % 40 41 1328

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures