Sequence Similarity Clusters for the Entities in PDB 1AHW

Entity #1 | Chains: A,D
IMMUNOGLOBULIN FAB 5G9 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27789
95 % 3 3 18511 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 26 2133
70 % 1765 2329 1
50 % 3581 4717 1
40 % 3581 4717 1
30 % 4240 5571 1
Entity #2 | Chains: B,E
IMMUNOGLOBULIN FAB 5G9 (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27790
95 % 3 3 18455 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 18 18 1827
70 % 1728 2282 2
50 % 3582 4717 1
40 % 3582 4717 1
30 % 4241 5571 1
Entity #3 | Chains: C,F
TISSUE FACTOR protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 39 951
95 % 39 40 1240 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 39 40 1270
70 % 40 41 1244
50 % 40 41 1299
40 % 40 41 1311
30 % 40 41 1284

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.