Sequence Similarity Clusters for the Entities in PDB 1AGR

Entity #1 | Chains: A,D
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 7958
95 % 35 45 714 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.6
PDBFlex
90 % 38 51 549
70 % 48 66 390
50 % 51 77 401
40 % 56 97 333
30 % 58 99 329
Entity #2 | Chains: E,H
RGS4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39995
95 % 1 1 30405 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29117
70 % 1 1 26107
50 % 1 1 22319
40 % 1 1 19647
30 % 1 1 16631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.