Sequence Similarity Clusters for the Entities in PDB 1AGR

Entity #1 | Chains: A,D
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 8408
95 % 35 45 765 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 38 51 595
70 % 48 66 408
50 % 51 77 436
40 % 56 97 384
30 % 58 99 372
Entity #2 | Chains: E,H
RGS4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42097
95 % 1 1 31974 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30575
70 % 1 1 27293
50 % 1 1 23286
40 % 1 1 20497
30 % 1 1 17363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures