Sequence Similarity Clusters for the Entities in PDB 1AGR

Entity #1 | Chains: A,D
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 8270
95 % 35 45 746 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 38 51 583
70 % 48 66 401
50 % 51 77 423
40 % 56 97 360
30 % 58 99 351
Entity #2 | Chains: E,H
RGS4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41468
95 % 1 1 31509 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30147
70 % 1 1 26940
50 % 1 1 22981
40 % 1 1 20235
30 % 1 1 17144

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.