Sequence Similarity Clusters for the Entities in PDB 1AGR

Entity #1 | Chains: A,D
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 8640
95 % 35 45 778 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 38 51 610
70 % 48 66 431
50 % 51 77 447
40 % 56 98 403
30 % 58 100 390
Entity #2 | Chains: E,H
RGS4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42975
95 % 1 1 32594 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 31146
70 % 1 1 27785
50 % 1 1 23670
40 % 1 1 20834
30 % 1 1 17639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures