Sequence Similarity Clusters for the Entities in PDB 1AGQ

Entity #1 | Chains: A,B,C,D
GLIAL CELL-DERIVED NEUROTROPHIC FACTOR protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23640
95 % 1 1 20261 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 3 9771
70 % 1 3 9319
50 % 1 3 8430
40 % 1 3 7731
30 % 1 3 6815

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures