Sequence Similarity Clusters for the Entities in PDB 1AGQ

Entity #1 | Chains: A,B,C,D
GLIAL CELL-DERIVED NEUROTROPHIC FACTOR protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22467
95 % 1 1 20097 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 3 9799
70 % 1 3 9334
50 % 1 3 8472
40 % 1 3 7721
30 % 1 3 6688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures