Sequence Similarity Clusters for the Entities in PDB 1AGQ

Entity #1 | Chains: A,B,C,D
GLIAL CELL-DERIVED NEUROTROPHIC FACTOR protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23073
95 % 1 1 19822 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 3 9578
70 % 1 3 9143
50 % 1 3 8268
40 % 1 3 7576
30 % 1 3 6684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.