Sequence Similarity Clusters for the Entities in PDB 1AGF

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 16 2258
95 % 98 138 225
90 % 139 204 136
70 % 341 732 6
50 % 342 737 7
40 % 363 788 10
30 % 392 919 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 318 632 2
95 % 345 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 348 685 4
70 % 412 936 4
50 % 420 958 3
40 % 420 958 7
30 % 420 958 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKRYKL - 5R MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures