Sequence Similarity Clusters for the Entities in PDB 1AGF

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 16 2207
95 % 96 135 227
90 % 137 201 135
70 % 339 727 6
50 % 340 732 6
40 % 361 783 10
30 % 390 907 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 315 624 2
95 % 342 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 345 677 4
70 % 409 922 4
50 % 417 944 3
40 % 417 944 7
30 % 417 944 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKRYKL - 5R MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures