Sequence Similarity Clusters for the Entities in PDB 1AGF

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 16 2164
95 % 95 134 224
90 % 136 200 133
70 % 335 716 6
50 % 336 721 6
40 % 357 772 10
30 % 386 896 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 313 616 2
95 % 340 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 343 669 4
70 % 407 912 4
50 % 415 934 3
40 % 415 934 7
30 % 415 934 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKRYKL - 5R MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.