Sequence Similarity Clusters for the Entities in PDB 1AGD

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 2165
95 % 80 134 226 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 117 200 135
70 % 271 716 6
50 % 271 721 6
40 % 287 772 10
30 % 312 896 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 257 616 2
95 % 283 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 285 669 4
70 % 334 912 4
50 % 339 934 3
40 % 339 934 7
30 % 339 934 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.