Sequence Similarity Clusters for the Entities in PDB 1AGD

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 16 1938
95 % 72 122 212
90 % 104 177 141
70 % 243 630 7
50 % 243 635 7
40 % 255 677 11
30 % 275 793 14
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 544 2
95 % 253 587 3
90 % 255 596 4
70 % 300 823 5
50 % 304 843 5
40 % 304 843 9
30 % 304 843 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.