Sequence Similarity Clusters for the Entities in PDB 1AGD

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 16 2113
95 % 80 134 218
90 % 117 200 132
70 % 263 688 6
50 % 263 693 6
40 % 279 743 10
30 % 301 861 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 596 2
95 % 275 640 3
90 % 277 649 4
70 % 324 879 4
50 % 329 901 3
40 % 329 907 9
30 % 329 901 14
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.