Sequence Similarity Clusters for the Entities in PDB 1AGD

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 2233
95 % 81 135 230 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 118 201 138
70 % 275 727 6
50 % 275 732 6
40 % 291 783 10
30 % 316 909 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 259 624 2
95 % 285 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 287 677 4
70 % 336 924 4
50 % 341 946 3
40 % 341 946 7
30 % 341 946 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures