Sequence Similarity Clusters for the Entities in PDB 1AGD

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 2258
95 % 83 138 225 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 120 204 136
70 % 277 732 6
50 % 277 737 7
40 % 293 788 10
30 % 318 919 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 261 632 2
95 % 287 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 289 685 4
70 % 338 936 4
50 % 343 958 3
40 % 343 958 7
30 % 343 958 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures