Sequence Similarity Clusters for the Entities in PDB 1AGC

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 16 2076
95 % 87 134 214
90 % 124 196 139
70 % 291 681 6
50 % 291 686 6
40 % 306 736 10
30 % 327 853 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 272 590 2
95 % 298 633 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 300 642 4
70 % 351 872 4
50 % 357 894 4
40 % 357 894 8
30 % 357 894 14
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYQL - 7Q MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.