Sequence Similarity Clusters for the Entities in PDB 1AGC

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 16 2164
95 % 87 134 224 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 125 200 133
70 % 302 716 6
50 % 302 721 6
40 % 318 772 10
30 % 344 896 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 283 616 2
95 % 309 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 311 669 4
70 % 366 912 4
50 % 372 934 3
40 % 372 934 7
30 % 372 934 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGKKKYQL - 7Q MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.