Sequence Similarity Clusters for the Entities in PDB 1AGB

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 16 2623
95 % 104 138 230
90 % 150 204 137
70 % 379 740 6
50 % 385 754 7
40 % 404 806 9
30 % 433 930 12
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 365 666 2
95 % 374 681 2
90 % 377 690 4
70 % 452 944 4
50 % 460 966 3
40 % 460 966 6
30 % 460 966 9
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGRKKYKL - 3R MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures