Sequence Similarity Clusters for the Entities in PDB 1AGB

Entity #1 | Chains: A
B*0801 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 16 2207
95 % 102 135 227
90 % 148 201 135
70 % 372 727 6
50 % 373 732 6
40 % 396 783 10
30 % 425 907 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 342 624 2
95 % 369 668 3
90 % 372 677 4
70 % 444 922 4
50 % 452 944 3
40 % 452 944 7
30 % 452 944 12
Entity #3 | Chains: C
HIV-1 GAG PEPTIDE (GGRKKYKL - 3R MUTATION) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures