Sequence Similarity Clusters for the Entities in PDB 1AFV

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 35 196
95 % 25 45 214 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 26 46 221
70 % 26 46 249
50 % 30 50 259
40 % 30 50 275
30 % 33 53 275
Entity #2 | Chains: L,M
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40266
95 % 13 22 579 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 77 99 152
70 % 2050 2287 1
50 % 4159 4633 1
40 % 4159 4633 1
30 % 4932 5461 1
Entity #3 | Chains: H,K
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39953
95 % 1 1 30594 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 27 29 861
70 % 2013 2244 2
50 % 4160 4633 1
40 % 4160 4633 1
30 % 4933 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.