Sequence Similarity Clusters for the Entities in PDB 1AFV

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 35 184
95 % 25 45 191
90 % 26 46 196
70 % 26 46 222
50 % 30 50 235
40 % 30 50 260
30 % 33 53 265
Entity #2 | Chains: L,M
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38176
95 % 2 2 21679
90 % 64 77 267
70 % 1611 1765 2
50 % 3943 4337 1
40 % 3943 4337 1
30 % 4665 5109 1
Entity #3 | Chains: H,K
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37875
95 % 1 1 29007
90 % 23 25 1087
70 % 1905 2096 1
50 % 3944 4337 1
40 % 3944 4337 1
30 % 4666 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.