Sequence Similarity Clusters for the Entities in PDB 1AFV

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 35 193
95 % 25 45 211 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 26 46 219
70 % 26 46 248
50 % 30 50 256
40 % 30 50 272
30 % 33 53 273
Entity #2 | Chains: L,M
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39630
95 % 12 21 587 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 76 98 152
70 % 2028 2264 1
50 % 4115 4587 1
40 % 4115 4587 1
30 % 4865 5392 1
Entity #3 | Chains: H,K
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39319
95 % 1 1 30090 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 23 25 1125
70 % 1992 2222 2
50 % 4116 4587 1
40 % 4116 4587 1
30 % 4866 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.