Sequence Similarity Clusters for the Entities in PDB 1AFV

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 35 208
95 % 25 45 227 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 26 46 236
70 % 26 46 267
50 % 30 50 271
40 % 30 50 286
30 % 33 53 288
Entity #2 | Chains: L,M
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41957
95 % 13 22 601 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 82 105 152
70 % 2210 2474 1
50 % 4483 5011 1
40 % 4483 5011 1
30 % 5356 5941 1
Entity #3 | Chains: H,K
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41631
95 % 1 1 31797 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 27 29 908
70 % 2166 2424 2
50 % 4484 5011 1
40 % 4484 5011 1
30 % 5357 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures