Sequence Similarity Clusters for the Entities in PDB 1AFV

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 35 201
95 % 25 45 220 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 26 46 226
70 % 26 46 257
50 % 30 50 262
40 % 30 50 277
30 % 33 53 278
Entity #2 | Chains: L,M
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40709
95 % 13 22 590 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 79 101 155
70 % 2101 2346 1
50 % 4262 4752 1
40 % 4262 4752 1
30 % 5061 5606 1
Entity #3 | Chains: H,K
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40395
95 % 1 1 30921 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 27 29 873
70 % 2060 2299 2
50 % 4263 4752 1
40 % 4263 4752 1
30 % 5062 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.