Sequence Similarity Clusters for the Entities in PDB 1AFV

Entity #1 | Chains: A,B
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 35 206
95 % 25 45 225 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 26 46 232
70 % 26 46 266
50 % 30 50 270
40 % 30 50 285
30 % 33 53 285
Entity #2 | Chains: L,M
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41453
95 % 13 22 599 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 81 103 153
70 % 2171 2426 1
50 % 4403 4913 1
40 % 4403 4913 1
30 % 5214 5780 1
Entity #3 | Chains: H,K
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41133
95 % 1 1 31429 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 27 29 901
70 % 2127 2376 2
50 % 4404 4913 1
40 % 4404 4913 1
30 % 5215 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures