Sequence Similarity Clusters for the Entities in PDB 1AFQ

Entity #1 | Chains: A
BOVINE GAMMA-CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
BOVINE GAMMA-CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 38 819
95 % 12 38 1121
90 % 12 38 1145
70 % 12 40 1139
50 % 12 40 1179
40 % 12 42 1145
30 % 13 50 981
Entity #3 | Chains: C
BOVINE GAMMA-CHYMOTRYPSIN protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 820
95 % 12 38 1122 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 12 38 1147
70 % 12 40 1142
50 % 12 43 1112
40 % 13 52 978
30 % 13 52 951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.