Sequence Similarity Clusters for the Entities in PDB 1ADQ

Entity #1 | Chains: A
IGG4 REA FC protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62566
95 % 138 160 113 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.4
PDBFlex
90 % 145 169 92
70 % 146 170 108
50 % 157 181 141
40 % 157 181 153
30 % 4800 5780 1
Entity #2 | Chains: L
IGM-LAMBDA RF-AN FAB (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62089
95 % 17 19 1210 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 53 64 351
70 % 2005 2426 1
50 % 4067 4913 1
40 % 4067 4913 1
30 % 4801 5780 1
Entity #3 | Chains: H
IGM-LAMBDA RF-AN FAB (HEAVY CHAIN) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60880
95 % 1 1 42790
90 % 1 1 40781
70 % 9 9 4474
50 % 4068 4913 1
40 % 4068 4913 1
30 % 4802 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures