Sequence Similarity Clusters for the Entities in PDB 1AD9

Entity #1 | Chains: A,L
IGG CTM01 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40529
95 % 1 1 31024 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29821
70 % 1729 2362 1
50 % 3505 4781 1
40 % 3505 4781 1
30 % 4139 5635 1
Entity #2 | Chains: B,H
IGG CTM01 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40530
95 % 1 1 31025 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 29822
70 % 1689 2311 2
50 % 3506 4781 1
40 % 3506 4781 1
30 % 4140 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures