Sequence Similarity Clusters for the Entities in PDB 1AD8

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 201 336 55
95 % 203 344 70 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 203 344 76
70 % 203 344 90
50 % 203 344 123
40 % 203 344 142
30 % 203 344 154
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 334 56
95 % 223 380 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 225 387 60
70 % 225 411 60
50 % 225 411 95
40 % 1233 1900 4
30 % 1240 1914 7
Entity #3 | Chains: I
HIRUDIN (53-65) PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures