Sequence Similarity Clusters for the Entities in PDB 1AD8

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 202 337 58
95 % 204 345 75 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 204 345 79
70 % 204 345 93
50 % 204 345 127
40 % 204 345 147
30 % 204 345 161
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 334 59
95 % 224 381 61 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 226 388 68
70 % 226 412 72
50 % 226 412 98
40 % 1260 1933 4
30 % 1267 1947 6
Entity #3 | Chains: I
HIRUDIN (53-65) PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures