Sequence Similarity Clusters for the Entities in PDB 1AD8

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 335 54
95 % 202 343 69 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 202 343 74
70 % 202 343 89
50 % 202 343 118
40 % 202 343 140
30 % 202 343 151
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 333 55
95 % 222 379 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 224 386 59
70 % 224 410 52
50 % 224 410 93
40 % 1231 1898 4
30 % 1238 1912 7
Entity #3 | Chains: I
HIRUDIN (53-65) PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures