Sequence Similarity Clusters for the Entities in PDB 1AD8

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 335 45
95 % 199 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 199 336 66
70 % 199 338 78
50 % 199 338 107
40 % 199 338 131
30 % 199 338 136
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 178 290 57
95 % 219 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 221 381 39
70 % 221 405 46
50 % 221 405 84
40 % 1116 1698 4
30 % 1202 1848 6
Entity #3 | Chains: I
HIRUDIN (53-65) PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures