Sequence Similarity Clusters for the Entities in PDB 1AD8

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 334 53
95 % 202 342 65 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 202 342 69
70 % 202 342 82
50 % 202 342 114
40 % 202 342 135
30 % 202 342 146
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 332 54
95 % 222 378 55 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 224 385 57
70 % 224 409 47
50 % 224 409 86
40 % 1232 1894 4
30 % 1239 1908 6
Entity #3 | Chains: I
HIRUDIN (53-65) PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures