Sequence Similarity Clusters for the Entities in PDB 1ACY

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41640
95 % 29 40 772 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 63 103 153
70 % 1786 2426 1
50 % 3623 4913 1
40 % 3623 4913 1
30 % 4272 5780 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41044
95 % 2 2 31380 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 30175
70 % 1747 2376 2
50 % 3624 4913 1
40 % 3624 4913 1
30 % 4273 5780 1
Entity #3 | Chains: P
HIV-1 GP120 (MN ISOLATE) protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 10216
95 % 6 6 10245
90 % 6 6 10121
70 % 16 16 2815
50 % 16 16 2777
40 % 16 16 2729
30 % 16 16 2565

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures