Sequence Similarity Clusters for the Entities in PDB 1ACY

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38616
95 % 23 34 909
90 % 51 78 267
70 % 1346 1773 2
50 % 3271 4363 1
40 % 3271 4363 1
30 % 3852 5147 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38055
95 % 2 2 29157
90 % 2 2 28082
70 % 1579 2109 1
50 % 3272 4363 1
40 % 3272 4363 1
30 % 3853 5147 1
Entity #3 | Chains: P
HIV-1 GP120 (MN ISOLATE) protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 9424
95 % 6 6 9471
90 % 6 6 9360
70 % 15 15 2856
50 % 15 15 2804
40 % 15 15 2777
30 % 15 15 2601

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.