Sequence Similarity Clusters for the Entities in PDB 1ACY

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40444
95 % 28 39 763 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 60 99 152
70 % 1679 2287 1
50 % 3408 4633 1
40 % 3408 4633 1
30 % 4022 5461 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39864
95 % 2 2 30545 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 29387
70 % 1647 2244 2
50 % 3409 4633 1
40 % 3409 4633 1
30 % 4023 5461 1
Entity #3 | Chains: P
HIV-1 GP120 (MN ISOLATE) protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 9890
95 % 6 6 9960
90 % 6 6 9848
70 % 15 15 2989
50 % 15 15 2945
40 % 15 15 2908
30 % 15 15 2719

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.