Sequence Similarity Clusters for the Entities in PDB 1ACY

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38117
95 % 23 34 886
90 % 50 77 262
70 % 1330 1752 2
50 % 3201 4272 1
40 % 3201 4272 1
30 % 3768 5038 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37567
95 % 2 2 28791
90 % 2 2 27740
70 % 1546 2066 1
50 % 3202 4272 1
40 % 3202 4272 1
30 % 3769 5038 1
Entity #3 | Chains: P
HIV-1 GP120 (MN ISOLATE) protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 9287
95 % 6 6 9334
90 % 6 6 9235
70 % 15 15 2809
50 % 15 15 2758
40 % 15 15 2728
30 % 15 15 2563

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.