Sequence Similarity Clusters for the Entities in PDB 1ACY

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31581
95 % 29 40 803 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 66 109 151
70 % 1890 2593 1
50 % 3847 5263 1
40 % 4351 5933 1
30 % 5430 7388 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36344
95 % 2 2 27408 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 26383
70 % 1858 2550 2
50 % 3848 5263 1
40 % 4352 5933 1
30 % 5431 7388 1
Entity #3 | Chains: P
HIV-1 GP120 (MN ISOLATE) protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 6786
95 % 8 8 6916
90 % 8 8 6897
70 % 13 13 3470
50 % 18 18 2434
40 % 18 18 2391
30 % 18 18 2243

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures