Sequence Similarity Clusters for the Entities in PDB 1ACY

Entity #1 | Chains: L
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37340
95 % 23 34 850
90 % 48 74 265
70 % 1303 1710 2
50 % 3130 4166 1
40 % 3130 4167 1
30 % 3679 4915 1
Entity #2 | Chains: H
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36797
95 % 2 2 28188
90 % 2 2 27160
70 % 1513 2016 1
50 % 3131 4166 1
40 % 3131 4167 1
30 % 3680 4915 1
Entity #3 | Chains: P
HIV-1 GP120 (MN ISOLATE) protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 9125
95 % 6 6 9183
90 % 6 6 9079
70 % 15 15 2751
50 % 15 15 2700
40 % 15 15 2677
30 % 15 15 2510

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.