Sequence Similarity Clusters for the Entities in PDB 1ABW

Entity #1 | Chains: A
HEMOGLOBIN-BASED BLOOD SUBSTITUTE protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 19707
95 % 8 9 7699
90 % 8 9 7647
70 % 8 9 7441
50 % 8 9 6853
40 % 8 9 6371
30 % 8 9 5699
Entity #2 | Chains: B,D
HEMOGLOBIN-BASED BLOOD SUBSTITUTE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 6658
95 % 83 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 85 250 19
70 % 106 341 12
50 % 231 744 4
40 % 232 749 8
30 % 582 1198 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.