Sequence Similarity Clusters for the Entities in PDB 1ABW

Entity #1 | Chains: A
HEMOGLOBIN-BASED BLOOD SUBSTITUTE protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 20519
95 % 8 9 7989
90 % 8 9 7928
70 % 8 9 7701
50 % 8 9 7097
40 % 8 9 6593
30 % 8 9 5897
Entity #2 | Chains: B,D
HEMOGLOBIN-BASED BLOOD SUBSTITUTE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 6914
95 % 86 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 88 255 19
70 % 109 346 14
50 % 237 754 4
40 % 238 759 8
30 % 605 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures