Sequence Similarity Clusters for the Entities in PDB 1ABI

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 334 53
95 % 193 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 193 342 67
70 % 193 342 81
50 % 193 342 112
40 % 193 342 135
30 % 193 342 146
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 188 332 52
95 % 211 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 213 385 56
70 % 213 409 47
50 % 213 409 85
40 % 1186 1885 4
30 % 1193 1899 7
Entity #3 | Chains: I
HIRULOG 3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50965
95 % 1 1 42093
90 % 1 1 40093
70 % 1 1 35415
50 % 1 1 30076
40 % 1 1 26346
30 % 1 1 21978

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures