Sequence Similarity Clusters for the Entities in PDB 1ABI

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 338 45
95 % 193 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 193 339 67
70 % 193 341 78
50 % 193 341 107
40 % 193 341 131
30 % 193 341 138
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 290 59
95 % 211 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 213 384 40
70 % 213 408 46
50 % 213 408 84
40 % 1100 1721 4
30 % 1180 1871 6
Entity #3 | Chains: I
HIRULOG 3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76621
95 % 1 1 53486
90 % 1 1 50685
70 % 1 1 44353
50 % 1 1 37872
40 % 1 1 33439
30 % 1 1 28427

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures