Sequence Similarity Clusters for the Entities in PDB 1ABI

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 338 45
95 % 193 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 193 339 67
70 % 193 341 78
50 % 193 341 109
40 % 193 341 132
30 % 193 341 140
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 290 75
95 % 211 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 213 384 48
70 % 213 408 46
50 % 213 408 84
40 % 1179 1863 4
30 % 1187 1885 6
Entity #3 | Chains: I
HIRULOG 3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77478
95 % 1 1 54075
90 % 1 1 51224
70 % 1 1 44815
50 % 1 1 38264
40 % 1 1 33790
30 % 1 1 28729

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures