Sequence Similarity Clusters for the Entities in PDB 1ABI

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 190 335 44
95 % 190 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 190 336 65
70 % 190 338 76
50 % 190 338 99
40 % 190 338 122
30 % 190 338 134
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 290 55
95 % 208 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 210 381 38
70 % 210 405 44
50 % 210 405 78
40 % 1074 1681 4
30 % 1154 1830 6
Entity #3 | Chains: I
HIRULOG 3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73133
95 % 1 1 51104
90 % 1 1 48517
70 % 1 1 42635
50 % 1 1 36517
40 % 1 1 32268
30 % 1 1 27432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.