Sequence Similarity Clusters for the Entities in PDB 1AAP

Entity #1 | Chains: A,B
ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 5917
95 % 1 7 4562 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 1 7 4588
70 % 1 7 4496
50 % 28 148 178
40 % 28 162 176
30 % 28 162 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures