Sequence Similarity Clusters for the Entities in PDB 1AAP

Entity #1 | Chains: A,B
ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 5823
95 % 1 7 4492 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 1 7 4514
70 % 1 7 4434
50 % 28 148 174
40 % 28 162 173
30 % 28 162 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.